800.227.0627

T Cell Defined Human Tumor Antigens

T cell-defined human tumor antigens
 
The discovery of the first human T cell defined-tumor antigen in 1991 by van der Bruggen et al. initiated the discovery of many new tumor antigens. A growing number of these antigens have now been described and close to a dozen of new antigenic peptides are reported in the literature every year. Immunologists now know that human melanoma tumors express antigens that are recognized in vitro by cytolytic T lymphocytes (CTLs) derived from the tumor of the patient. The identified gene was found to direct the expression of antigen MZ2-E on a human melanoma cell line. The antigenic peptide of MZ2-D is a nonapeptide that is encoded by the sequence of MAGE-3 that is homologous to the MAGE-1 sequence coding for the MZ2-E peptide. This gene had no similarity to known sequences and was found to belong to a family of at least three genes. It was found that melanoma cells, other melanoma cell lines, and some tumor cells of other histological types expressed the gene. However, no expression was observed in a panel of normal tissues. Van der Bruggen et al. reported that the antigen MZ2-E appears to be presented by HLA-A1 and that anti-MZ2-E CTLs of the original patient recognized two melanoma cell lines of other HLA-A1 patients that expressed the gene. Furthermore, the researchers speculated that a precisely targeted immunotherapy directed against antigen MZ2-E could be provided to individuals identified by HLA typing and analysis of the RNA of a small tumor sample. Now human tumor antigens recognized by CD4+ or CD8+ T cells are being defined at a regular pace. A database of T cell-defined human tumor antigens has been established.
 
 
The data base contains a list of antigens that are grouped into unique antigens and shared antigens. The shared antigens are further divided into tumor-specific antigens, differentiation antigens and over expressed antigens. The tables provide the following information for each antigen:
 
(a)  A GeneCard link for the encoding gene and/or the parent protein,
(b)  The HLA presenting molecule and its frequency in Caucasians,
(c)  The peptide sequence and its position in the protein sequence,
(d)  The method used to isolate the CTL recognizing the antigen,
(e)  A PubMed link to the relevant reference.
 
The database contains a list of “validated peptides” which were selected to meet the following six requirements:
 
1.  Isolation of stable human T lymphocyte clones or lines recognizing the peptide
2.  Identification of the peptide recognized by the T cells
3.  Identification of the HLA presenting molecule
4.  Evidence that the peptide is processed by tumor cells and presented to the specific CTL
 
 
What is an antigen?
 
Let us quickly clarify what an antigen is. An antigen is a rather loosely used term for the target molecules of antibodies or T cells. An antigen, also known as an antibody generator, can be any substance which is able to provoke an adaptive immune response.Often this can be a foreign or toxic substance or an organism, for example, a bacterium, which, once it gets into in a mammalian body, attracts and is bound to a specific antibody. In addition, the origin of the antigen may be within the body, also called a "self" antigen, or from the external environment, called a "non-self" antigen. To describe it more precisely, an antibody binds to a region of an antigen called the epitope. In contrast, the T cell receptor binds to a peptide that is a fragment of the antigen. In addition, the epitope of an antigen is recognized by both, B and T cell receptors.
 
However, a tumor antigen is a substance produced in tumor cells that can trigger an immune response in the host. Tumor antigens turned out to be useful tumor markers that allow the identification of tumor cells via diagnostic tests. These tumor antigens are now considered as potential candidates for use in cancer therapy. However, normal proteins in the human body are not antigenic since they do not produce an immune response in the host. This phenomenon is called self-tolerance.
 
Self-tolerance is a process in which self-reacting cytotoxic T lymphocytes (CTLs) and autoantibody-producing B lymphocytes are selected from a large number of self peptides or antigens "centrally" in primary lymphatic tissue (BM) and "peripherally" in secondary lymphatic tissue. This process mostly occurs in the thymus involving T-cells and the spleen or lymph nodes involving B cells. Therefore any protein that is not exposed to the immune system can trigger an immune response. Furthermore, over the years, several preclinical animal studies have convincingly demonstrated that tumor immunity to self antigens can be actively induced and can translate into an effective anti-tumor response.

 
Tumor Antigens Resulting from Mutations

Gene/ protein

Tumor

HLAa

HLA
Freque-
ncyb (%)

Peptidec

Position

Lymphocyte Stimulation Method

References

alpha-actinin-4

lung carcinoma

A2

44

FIASNGVKLV

118-127

autologous tumor cells

Echchakir,
 2001

ARTC1

melanoma

DR1

18

YSVYFNLP
ADTIYTNh

 

autologous- tumor cells

Wang, 2005

BCR-ABL
fusion protein
(b3a2)

chronic
myeloid
leukemia

A2

44

SSKALQRPV

926-934

peptide

Yotnda, 1998a

B8

14

GFKQSSKAL

922-930

peptide

Yotnda, 1998a

DR4

24

ATGFKQSS
KALQRPVAS

920-936

peptide

ten Bosch,
 1996

DR9

3

ATGFKQSS
KALQRPVAS

920-936

peptide

Makita, 2002

B-RAF

melanoma

DR4

24

EDLTVKI
GDFGLAT
EKS-
RWSGSH
QFEQLS

586-614

peptide

Sharkey, 2004

CASP-5

colorectal, gastric, and endometrial carcinoma

A2

44

FLIIWQNTMg

67-75

peptide

Schwitalle,
 2004

CASP-8

head and neck squamous cell carcinoma

B35

20

FPSDSWCYF

476-484

autologous tumor cells

Mandruzzato
, 1997

beta-catenin

melanoma

A24

20

SYLDSGIHF

29-37

autologous- tumor cells

Robbins, 1996

Cdc27

melanoma

DR4

24

FSWAMD
LDPKGAe

760-771

autologous- tumor cells

Wang, 1999b

CDK4

melanoma

A2

44

ACDPHS
GHFV

23-32

autologous- tumor cells

Wolfel, 1995

CDKN2A

melanoma

A11

13

AVCPW
TWLRg

125-133 (p14ARF
-ORF3)
111-119 (p16INK
4a-ORF3)

autologous- tumor cells

Huang, 2004

CLPP

melanoma

 A2

 44

ILDKVLVHL

 240-248

autologous- tumor cells

Corbière, 2011

COA-1

colorectal carcinoma

DR4

24

TLYQDDT
LTLQAAGe

447-460

autologous- tumor cells

Maccalli, 2003

DR13

19

TLYQDDT
LTLQAAGe

447-460

autologous- tumor cells

Maccalli, 2003

dek-can
fusion protein

myeloid leukemia

DR53

49

TMKQICKK
EIRRLHQY

342-357

peptide

Makita, 2002

EFTUD2

melanoma

A3

22

KILDAVVAQK

668-677

autologous- tumor cells

Lennerz, 2005

Elongation
factor 2

lung squamous CC

A68

8

ETVSEQSNV

581-589

autologous- tumor cells

Hogan, 1998

ETV6-AML1
fusion protein

acute lymphoblastic leukemia

A2

44

RIAECILGMi

334-342

peptide

Yotnda, 1998b

DP5

3

IGRIA
ECILGMNPSR

332-346

peptide

Yun, 1999

DP17

1

IGRIA
ECILGMNPSR

332-346

peptide

Yun, 1999

FLT3-ITD

acute myelogenous leukemia

A1

26

YVDFREYEYY

591-600

peptide

Graf, 2007

FN1

melanoma

DR2

25

MIFE
KHGFRRTTPP

2050-2063

autologous tumor cells

Wang, 2002

GPNMB

melanoma

A3

22

TLDWLLQTPK

179-188

autologous tumor cells

Lennerz, 2005

LDLR-fucosyl-transferaseAS fusion protein

melanoma

DR1

18

WRRAPAPGA

315-323

autologous tumor cells

Wang, 1999a

DR1

18

PVTWRRAPA

312-320

autologous tumor cells

Wang, 1999a

HLA-A2d

renal cell carcinoma

       

autologous tumor cells

Brandle, 1996

HLA-A11d

melanoma

       

autologous tumor cells

Huang, 2004

hsp70-2

renal cell carcinoma

A2

44

SLFEGIDIYT

286-295

autologous tumor cells

Gaudin, 1999

 

bladder tumor

B44

21

AEPINIQTW

262-270

autologous tumor cells

Gueguen, 1998

MART2

melanoma

A1

26

FLEGNEV
GKTY

446-455

autologous tumor cells

Kawakami,
 2001

ME1

non-small cell lung carcinoma

A2

44

FLDEFMEGV

224-232

autologous tumor cells

Karanikas,
 2001

MUM-1f

melanoma

B44

21

EEKLIVVLF

30-38

autologous tumor cells

Coulie, 1995

MUM-2

melanoma

B44

21

SELFRS
GLDSY

123-133

autologous tumor cells

Chiari, 1999

Cw6

18

FRSGLDSYV

126-134

autologous tumor cells

Chiari, 1999

MUM-3

melanoma

A68

8

EAFIQPITR

322-330

autologous tumor cells

Baurain, 2000

neo-PAP

melanoma

DR7

25

RVIKNSIRLTLe

724-734

autologous tumor cells

Topalian,
 2002

Myosin class I

melanoma

A3

22

KINKNPKYK

911-919

expansion of TIL with IL-2

Zorn, 1999

NFYC

lung squamous cell carcinoma

B52

5

QQITKTEV

275-282

autologous tumor cells

Takenoyama,
 2006

OGT

colorectal carcinoma

A2

44

SLYKFSPFPLg

28-37

peptide

Ripberger,
 2003

OS-9

melanoma

B44

21

KELEGILLL

438-446

autologous tumor cells

Vigneron,
 2002

p53

head and neck squamous cell carcinoma

A2

44

VVPCEPPEV

217-225

peptide

Ito, 2007

pml-RARalpha fusion protein

promyelocytic leukemia

DR11

25

NSNHVA
SGAGEA-
AIETQSS
SSEEIV

 

peptide

Gambacorti,
 1993

PRDX5

melanoma

A2

44

LLLDDLLVSI

163-172

peptide

Sensi, 2005

PTPRK

melanoma

DR10

3

PYYFAAELPP-
RNLPEP

667-682

autologous tumor cells

Novellino,
 2003

K-ras

pancreatic adenoca
rcinoma

B35

20

VVVGAVGVG

7-15

peptide

Gjertsen, 1997

N-ras

melanoma

A1

26

ILDTAGREEY

55-64

autologous tumor cells

Linard, 2002

RBAF600

melanoma

B7

17

RPHVPESAF

329-337

autologous tumor cells

Lennerz, 2005

SIRT2

melanoma

A3

22

KIFSEVTLK

192-200

autologous tumor cells

Lennerz, 2005

SNRPD1

melanoma

B38

5

SHETVIIEL

11-19

autologous tumor cells

Lennerz, 2005

SYT-SSX1 or -SSX2 fusion protein

sarcoma

B7

17

QRPYGYDQIM

402-410 

(SYT)
111-112 

(SSX2)

peptide

Worley, 2001

TGF-betaRII

colorectal carcinoma

A2

44

RLSSCVPVAg

131-139

peptide

Linnebacher,
 2001

Triosephosphate isomerase

melanoma

DR1

18

GELIGILN-
AAKVPAD

23-37

autologous tumor cells

Pieper, 1999

aClass II HLA are indicated in blue. bFrequency in Caucasians, based on (1) Marsh SGE, Parham P, Barber LD. The HLA Factsbook (Academic Press, 2000) for HLA-A, B, C, and DR, and (2) Colombani J. HLA, Fonctions immunitaires et applications médicales (John Libbey Eurotext, 1993) for HLA-DP and DR. cThe residues modified by the mutation are indicated in red. dThe mutation affects the HLA gene itself. eThe mutation is not located in the region encoding the peptide. fLink to GenBank. gFrameshift product. hThe mutation creates a start codon (ATG) that opens an alternative ORF encoding the antigenic peptide. This peptide is recognized by regulatory T cells (Tregs). iIt was reported that this peptide is not naturally processed (Popovic 2011).



Shared Tumor-Specific Antigens

Gene

HLAa

HLA
Freq-
uencyb (%)

Peptide

Position

Lymphocyte Stimulation Method

References

BAGE-1

Cw16

7

AARAVFLAL

2-10

autologous tumor cells

Boel, 1995

Cyclin-A1

A2

44

FLDRFLSCM

227-235

peptide

Ochsenreither
2012

A2

44

SLIAAAAFCLA

341-351

peptide

Ochsenre
ither, 2012

GAGE-1,2,8

Cw6

18

YRPRPRRY

9-16

autologous tumor cells

Van den 
Eynde, 1995

GAGE-3,4,5,6,7

A29

6

YYWPRPRRY

10-18

autologous tumor cells

De Backer,
 1999

GnTVf

A2

44

VLPDVFIRC(V)

intron

autologous tumor cells

Guilloux,
 1996

HERV-K-MEL

A2

44

MLAVISCAV

1-9

autologous tumor cells

Schiavetti,
 2002

KK-LC-1

B15

13

RQKRILVNL

76-84

autologous tumor cells

Fukuyama,

KM-HN-1

A24

20

NYNNFYRFL

196-204

peptide

Monji, 2004

A24

20

EYSKECLKEF

499-508

peptide

Monji, 2004

A24

20

EYLSLSDKI

770-778

peptide

Monji, 2004

LAGE-1

A2

44

MLMAQEALAFL

ORF2
(1-11)

autologous tumor cells

Aarnoudse,
 1999

A2

44

SLLMWITQC

157-165

peptide

Rimoldi, 2000

A31

5

LAAQERRVPR

ORF2
(18-27)

autologous tumor cells

Wang, 1998

A68

8

ELVRRILSR

103-111

adenovirus-dendritic cells

Sun, 2006

B7

17

APRGVRMAV

ORF2
( 46-54)

adenovirus-APC

Slager, 2004b

DP4

75

SLLMWITQCFLPVF

157-170

peptide

Zeng, 2001

DR3

21

QGAMLAAQER
RVPRAAEVPR

ORF2
(14-33)

protein

Slager, 2004a

DR4

24

AADHRQLQL
SISSCLQQL

139-156

protein

Jager, 2000

DR11

25

CLSRRPWKRSW
SAGSCPGMPHL

ORF2
(81-102)

peptide

Slager, 2003

DR12

5

CLSRRPWKRSW
SAGSCPGMPHL

ORF2
(81-102)

peptide

Slager, 2003

DR13

19

ILSRDAAPLPRPG

108-120

autologous tumor cells

Wang, 2004

DR15

20

AGATGGRGPRGAGA

37-50

protein

Hasegawa,
 2006

MAGE-A1

A1

26

EADPTGHSY

161-169

autologous tumor cells

Traversari,
 1992

A2

44

KVLEYVIKV

278-286

peptide

Ottaviani,
 2005

Pascolo,
 2001

A3

22

SLFRAVITK

96-104

poxvirus-dendritic cellsc

Chaux, 1999a

A68

8

EVYDGREHSA

222-231

poxvirus-dendritic cells

Chaux, 1999a

B7

17

RVRFFFPSL

289-298

poxvirus-dendritic cells

Luiten, 2000a

B35

20

EADPTGHSY

161-169

poxvirus-dendritic cells

Luiten, 2000b

B37

3

REPVTKAEML

120-129

autologous tumor cells

Tanzarella,
 1999

B44

21

KEADPTGHSY

160-169

poxvirus-dendritic cells

Stroobant,
2012

B53

2

DPARYEFLW

258-266

poxvirus-dendritic cells

Chaux, 1999a

B57

8

ITKKVADLVGF

102-112

ALVAC-dendritic cells

Corbière, 2004

Cw2

10

SAFPTTINF

62-70

poxvirus-dendritic cells

Chaux, 1999a

Cw3

17

SAYGEPRKL

230-238

poxvirus-dendritic cells

Chaux, 1999a

Cw7

41

RVRFFFPSL

289-298

peptide

Goodyear,
2011

Cw16

7

SAYGEPRKL

230-238

autologous tumor cells

van der 
Bruggen,
 1994a

DP4

75

TSCILESLFRAVITK

90-104

peptide

Wang, 2007

DP4

75

PRALAETS

268-282

peptide

Wang, 2007

DR13

19

FLLLKYRA
REPVTKAE

112-127

protein

Chaux, 1999b

DR15

20

EYVIKVSARVRF

281-292

protein

Chaux, 2001

MAGE-A2

A2

44

YLQLVFGIEV

157-166

peptide

Kawashima,
 1998

A24

20

EYLQLVFGI

156-164

peptide

Tahara, 1999

B37

3

REPVTKAEML

127-136

autologous tumor cells

Tanzarella,
 1999

Cw7

41

EGDCAPEEK

212-220

lentivirus-dendritic cells

Breckpot,
 2004

DR13

19

LLKYRAR
EPVTKAE

121-134

protein

Chaux, 1999b

MAGE-A3

A1

26

EVDPIGHLY

168-176

autologous tumor cells

Gaugler, 1994

A2

44

FLWGPRALVd

271-279

peptide

van der 
Bruggen,
 1994b

A2

44

KVAELVHFL

112-120

peptide

Kawashima,
 1998

A24

20

TFPDLESEF

97-105

peptide

Oiso, 1999

A24

20

VAELVHFLL

113-121

peptide

Miyagawa,
 2006

B18

6

MEVDPIGHLY

167-176

adeno-dendritic cells

Bilsborough,
 2002

B35

20

EVDPIGHLY

168-176

poxvirus-dendritic cells

Schultz, 2001

B37

3

REPVTKAEML

127-136

autologous tumor cells

Tanzarella,
 1999

B40

6

AELVHFLLLi

114-122

adeno-dendritic cells

Schultz, 2002

B44

21

MEVDPIGHLY

167-176

peptide

Herman, 1996

B52

5

WQYFFPVIF

143-151

retrovirus-dendritic cellsh

Russo, 2000

Cw7

41

EGDCAPEEK

212-220

lentivirus-dendritic cells

Breckpot,
 2004

DP4

75

KKLLTQHF
VQENYLEY

243-258

protein

Schultz, 2000

DP4

75

RKVAELVH
FLLLKYR

111-125

peptide

Cesson, 2011

DQ6

63

KKLLTQHF
VQENYLEY

243-258

peptide

Schultz, 2004

DR1

18

ACYEFLWG
PRALVETS

267-282

protein

Zhang, 2003

DR4

24

RKVAELVH
FLLLKYR

111-125

peptide

Cesson, 2010

DR4

24

VIFSKASSSLQL

149-160

peptide

Kobayashi,
 2001

DR7

25

VIFSKASSSLQL

149-160

peptide

Kobayashi,
 2001

DR7

25

VFGIELM
EVDPIGHL

161-175

peptide

Cesson, 2011

DR11

25

GDNQIMPK
AGLLIIV

191-205

peptide

Consogno,
 2003

DR11

25

TSYVKVLH
HMVKISG

281-295

protein

Manici, 1999

DR13

19

RKVAELVH
FLLLKYRA

111-126

protein

Chaux, 1999b

DR13

19

FLLLKYRA
REPVTKAE

119-134

protein

Chaux, 1999b

MAGE-A4

A1

26

EVDPASNTYj

169-177

peptide after tetramer sorting

Kobayashi,
 2003

A2

44

GVYDGREHTV

230-239

adeno-dendritic cells

Duffour, 1999

A24

20

NYKRCFPVI

143-151

peptide

Miyahara,
 2005

Ottaviani,
 2006

B37

3

SESLKMIF

156-163

poxvirus-dendritic cells

Zhang, 2002

MAGE-A6

A34

1

MVKISGGPR

290-298

autologous tumor cells

Zorn, 1999

B35

20

EVDPIGHVY

168-176

autologous tumor cells

Benlalam,
 2003

B37

3

REPVTKAEML

127-136

autologous tumor cells

Tanzarella,
 1999

Cw7

41

EGDCAPEEK

212-220

lentivirus-dendritic cells

Breckpot,
 2004

Cw16

7

ISGGPRISY

293-301

autologous tumor cells

Vantomme,
 2003

DR13

19

LLKYRAR
EPVTKAE

121-134

protein

Chaux, 1999b

MAGE-A9

A2

44

ALSVMGVYV

223-231

peptide

Oehlrich,
 2005

MAGE-A10

A2

44

GLYDGMEHLl

254-262

autologous tumor cells

Huang, 1999

B53

2

DPARYEFLW

290-298

poxvirus-de]ndritic cells

Chaux, 1999a

MAGE-A12

A2g

44

FLWGPRALVe

271-279

peptide

van der 
Bruggen,
 1994b

Cw7

41

VRIGHLYIL

170-178

autologous tumor cells

Heidecker,
 2000

Panelli, 2000

Cw7

41

EGDCAPEEK

212-220

lentivirus-dendritic cells

Breckpot,
 2004

DP4

75

REPFTKAE
MLGSVIR

127-141

peptide

Wang, 2007

DR13

19

AELVHFL
LLKYRAR

114-127

protein

Chaux, 1999b

MAGE-C1

A2

44

ILFGISLREV

959-968

peptide

Anderson,
2011

A2

44

KVVEFLAML

1083-1091

peptide

Anderson,
2011

DQ6

63

SSALLSIFQSSPE

137-149

peptide

Nuber, 2010

DQ6

63

SFSYTLLSL

450-458

peptide

Nuber, 2010

DR15

20

VSSFFSYTL

779-787

peptide

Nuber, 2010

MAGE-C2

A2

44

LLFGLALIEV

191-200

autologous tumor cells

Ma, 2004

A2

44

ALKDVEERV

336-344

autologous tumor cells

Ma, 2004

B44

21

SESIKKKVL

307-315

autologous tumor cells

Godelaine,
 2007

B57

8

ASSTLYLVF

42-50

autologous tumor cells

Ma, 2011

DR15

20

SSTLYLVF
SPSSFST

43-57

peptide

Wen, 2011

mucink

x

x

PDTRPAPGST
APPAHGVTSA

 

transfected B cells

Jerome, 1993

NA88-A

B13

6

QGQHFLQKV

x

tumor-infiltrating lymphocytes

Moreau-Aubry, 2000

NY-ESO-1 / LAGE-2

A2

44

SLLMWITQC

157-165

autologous tumor cells

Jager, 1998
Chen, 2000
Valmori, 2000

A2

44

MLMAQEALAFL

ORF2
(1-11)

autologous tumor cells

Aarnoudse,
 1999

A31

5

ASGPGGGAPR

53-62

autologous tumor cells

Wang, 1998

A31

5

LAAQERRVPR

ORF2
(18-27)

autologous tumor cells

Wang, 1998

A68

8

TVSGNILTIR

127-136

mRNA-transfected cells

Matsuzaki,
 2008

B7

17

APRGPHG
GAASGL

60-72

peptide

Ebert, 2009

B35

20

MPFATPMEA

94-102

autologous tumor cells

Benlalam,
 2003

B49

x

KEFTVSGNILTI

124-135

mRNA-transfected cells

Knights, 2009

B51

12

MPFATPMEA

94-102

adenovirus-APC

Jäger, 2002

Cw3

17

LAMPFATPM

92-100

adenovirus-PBMC

Gnjatic, 2000

Cw6

18

ARGPESRLL

80-88

adenovirus-PBMCd

Gnjatic, 2000

DP4

75

SLLMWIT
QCFLPVF

157-170

peptide

Zeng, 2001

DP4

75

LLEFYLAMPFATP
MEAELARRSLAQ

87-111

peptide

Mandic, 2005

DR1

18

LLEFYLAMPFATP
MEAELARRSLAQ

87-111

peptide

Mandic, 2005

DR1

18

EFYLAMPFATPM

89-100

protein

Chen, 2004

DR1

18

PGVLLKEFTVSG
NILTIRLTAADHR

119-143

peptide

Ayyoub,
 2010

DR2

25

RLLEFYLAMPFA

86-97

protein

Chen, 2004

DR3

21

QGAMLAAQER
RVPRAAEVPR

ORF2
(14-33)

protein

Slager, 2004a

DR4

24

PFATPMEAELARR

95-107

peptide

Mizote, 2010

DR4

24

PGVLLKEFTV
SGNILTIRLT

119-138

peptide and protein

Jager, 2000
Zarour, 2000

DR4

24

VLLKEFTVSG

121-130

peptide

Zeng, 2000

DR4

24

AADHRQLQL
SISSCLQQL

139-156

protein

Jager, 2000

DR4

24

LLEFYLAMPFATP
MEAELARRSLAQ

87-111

peptide

Mandic, 2005

DR52b

25

LKEFTVSGNILTIRL

123-137

protein

Bioley, 2009

DR7

25

PGVLLKEFTVSGN
ILTIRLTAADHR

119-143

peptide

Zarour, 2002

DR7

25

LLEFYLAM
PFATPM
EAELARRSLAQ

87-111

peptide

Mandic, 2005

DR8

4

KEFTVSGNILT

124-134

peptide

Mizote, 2010

DR9

3

LLEFYLAMPFATPM

87-100

peptide

Mizote, 2010

DR15

20

AGATGGR
GPRGAGA

37-50

protein

Hasegawa,
 2006

SAGE

A24

20

LYATVIHDI

715-723

peptide

Miyahara,
 2005

Sp17

A1

26

ILDSSEEDK

103-111

protein

Chiriva-Internati,
 2003

SSX-2

A2

44

KASEKIFYV

41-49

autologous tumor cells

Ayyoub,
 2002

DP1

14

EKIQKAFD
DIAKYFSK

19-34

peptide

Ayyoub,
 2004a

DR1

18

FGRLQGISPKI

101-111

peptide

Neumann,
2011

DR3

21

WEKMKASEK
IFYVYMKRK

37-54

peptide

Ayyoub,
 2005a

DR4

24

KIFYVYMK
RKYEAMT

45-59

peptide]

Neumann,
 2004

DR11

25

KIFYVYM
KRKYEAM

45-58

protein

Ayyoub,
 2004b

SSX-4

DP10

2

INKTSGPKRG
KHAWTHRLRE

151-170

peptide

Ayyoub,
 2005b

DR3

21

YFSKKEWEKM
KSSEKIVYVY

31-50

peptide

Ayyoub,
 2005b

DR8

4

MKLNYEVMTKL
GFKVTLPPF

51-70

peptide

Valmori, 2006

DR8

4

KHAWTHRLRE
RKQLVVYEEI

161-180

peptide

Valmori, 2006

DR11

25

LGFKVTLPPF
MRSKRAADFH

61-80

peptide

Ayyoub,
 2005b

DR15

20

KSSEKIVYVY
MKLNYEVMTK

41-60

peptide

Ayyoub,
 2005b

DR52

41

KHAWTHRLRE
RKQLVVYEEI

161-180

peptide

Valmori, 2006

TAG-1

A2

44

SLGWLFLLL

78-86

peptide

Adair, 2008

B8

14

LSRLSNRLL

42-50

peptide

Adair, 2008

TAG-2

B8

14

LSRLSNRLL

42-50

peptide

Adair, 2008

TRAG-3

DR1

18

CEFHACWP
AFTVLGE

34-48

peptide

Janjic, 2006

DR4

24

CEFHACWP
AFTVLGE

34-48

peptide

Janjic, 2006

DR7

25

CEFHACWP
AFTVLGE

34-48

peptide

Janjic, 2006

TRP2-INT2g

A68

8

EVISCKLIKR

intron 2

autologous tumor cells

Lupetti, 1998

XAGE-1b/GAGED2a

A2

44

RQKKIRIQL

21-29

peptide

Ohue, 2012

DR4

24

HLGSRQKK
IRIQLRSQ

17-32

peptide

Ohue, 2012

DR9

3

CATWKVICK
SCISQTPG

33-49

autologous tumor cells

Shimono, 2007

aClass II HLA are indicated in blue. bFrequency in Caucasians, based on (1) Marsh SGE, Parham P, Barber LD. The HLA Factsbook (Academic Press, 2000) for HLA-A, B, C, and DR, and (2) Colombani J. HLA, Fonctions immunitaires et applications médicales (John Libbey Eurotext, 1993) for HLA-DP and DR. cALVAC recombinant poxvirus carrying the entire gene were used to infect dendritic cells. dOnly processed by the intermediate proteasome β5i (Guillaume, 2010). eSame peptide as MAGE-A3/A2 (aa 271-279). fAberrant transcript of N-acetyl glucosaminyl transferase V (GnTV) that is found only in melanomas. gIncompletely spliced transcript found only in melanomas. hRetrovirus carrying the entire gene were used to infect dendritic cells. iThe processing of this peptide requires the immunoproteasome. jThis peptide is encoded by allele MAGE-4a, which is expressed in one third of MAGE-4 positive tumor samples. The other allele, namely MAGE-4b, encodes peptide EVDPTSNTY. kMHC-unrestricted recognition by CTL of a repeated motif that is unmasked in tumors due to mucin underglycosylation. Mucin underglycosylation also occurs in breast duct epithelial cells during lactation, but only at the extracellular apical surface, which is not accessible to T cells. lOnly processed by the intermediate proteasome β1iβ51 (Guillaume, 2010).


 
Differentiation Antigens
Gene / protein
Tumor
HLAa
HLA
Frequen
cyb

(%)
Peptide
Position
Lymphocyte
Stimulation
Method
References
 
gut carcinoma
A2
44
YLSGANLNLg
605-613
peptide
 
A2
44
IMIGVLVGV
691-699
peptide
 
A2
44
GVLVGVALI
694-702
peptide
 
A3
22
HLFGYSWYK
61-69
peptide
 
A24
20
QYSWFVNGTF
268-277
peptide
 
A24
20
TYACFVSNL
652-660
peptide
 
DR3
21
AYVCGIQ
NSVSANRS
568-582
peptide
 
DR4
24
DTGFYTLHVIKS
DLVNEEATGQFRV
116-140
peptide
 
DR4
24
YSWRINGI
PQQHTQV
625-639
peptide
 
DR7
25
TYYRPGVNLSLSC
425-437
peptide
 
DR7
25
EIIYPNASLLIQN
99-111
peptide
 
DR9
3
YACFVSNL
ATGRNNS
653-667
peptide
 
DR11
25
LWWVNNQSLPVSP
177-189
and
355-367
peptide
 
DR13
19
LWWVNNQSLPVSP
177-189
and
355-367
peptide
 
DR14
6
LWWVNNQSLPVSP
177-189
and
355-367
peptide
 
DR14
6
EIIYPNASLLIQN
99-111
peptide
 
DR14
6
NSIVKSITVSASG
666-678
peptide
 
melanoma
A2
44
KTWGQYWQV
154-162
autologous tumor cells
 
A2
44
(A)MLGTHTMEV
177(8)-186
peptide
 
A2
44
ITDQVPFSV
209-217
autologous tumor cells
 
A2
44
YLEPGPVTA
280-288
autologous tumor cells
 
A2
44
LLDGTATLRL
457-466
autologous tumor cells
 
A2
44
VLYRYGSFSV
476-485
autologous tumor cells
 
A2
44
SLADTNSLAV
570-579
peptide
 
A2
44
RLMKQDFSV
619-627
autologous tumor cells
 
A2
44
RLPRIFCSC
639-647
autologous tumor cells
 
A3
22
LIYRRRLMK
614-622
autologous tumor cells
 
A3
22
ALLAVGATK
17-25
autologous tumor cells
 
A3
22
IALNFPGSQK
86-95
peptide
 
A3
22
ALNFPGSQK
87-95
peptide
 
A11
13
ALNFPGSQK
87-95
peptide
 
A24
20
VYFFLPDHL
intron 4
autologous tumor cells
 
A32
8
RTKQLYPEW
40-42
and
47-52e
autologous tumor cells
 
A68
8
HTMEVTVYHR
182-191
autologous tumor cells
 
B7
17
SSPGCQPPA
529-537
autologous tumor cells
 
B35
20
VPLDCVLYRY
471-480
autologous tumor cells
 
B35
20
LPHSSSHWL
630-638
autologous tumor cells
 
Cw8
-c
SNDGPTLI
71-78
autologous tumor cells
 
DQ6
63
GRAMLGTH
TMEVTVY
175-189
peptide
 
DR4
24
WNRQLYPE
WTEAQRLD
44-59
peptide
 
DR7
25
TTEWVETTA
RELPIPEPE
420-437
protein
 
DR7
25
TGRAMLGTH
TMEVTVYH
174-190
retrovirus – dendritic cells
 
DR53
49
GRAMLGTH
TMEVTVY
175-189
peptide
 
breast cancer
A3
22
PLLENVISK
23-31
peptide
 
melanoma
A2
44
(E)AAGIGILTV
26(27)-35
autologous tumor cells
 
A2
44
ILTVILGVL
32-40
autologous tumor cells
 
B35
20
EAAGIGILTV
26-35
autologous tumor cells
 
B45
2
AEEAAGIGIL(T)
24-33(34)
autologous tumor cells
 
Cw7
41
RNGYRALMDKS
51-61
peptide
 
DP5
3
YTTAEEAAGIGIL
TVILGVLLL
IGCWYCRR
21-50
peptide
 
DQ6
63
EEAAGIGILTVI
25-36
peptide
 
DR1
18
AAGIGILTVILGVL
27-40
peptide
 
DR1
18
APPAYEKLpSAEQf
100-111
peptide
 
DR3
21
EEAAGIGILTVI
25-36
peptide
 
DR4
24
RNGYRALMDKSL
HVGTQCALTRR
51-73
peptide
 
DR11
25
MPREDAHFIY
GYPKKGHGHS
1-20
peptide
 
DR52
41
KNCEPVVPNA
PPAYEKLSAE
91-110
peptide
 
breast cancer
A2
44
SLSKILDTV
904-912
peptide
 
melanoma
A24
20
LYSACFWWL
126-134
peptide
 
prostate cancer
A2
44
FLFLLFFWL
18-26
peptide
 
A2
44
TLMSAMTNL
112-120
peptide
 
A2
44
ALDVYNGLL
299-307
peptide
 
prostate carcinoma
A2
44
FLTPKKLQCV
165-174
peptide
 
A2
44
VISNDVCAQV
178-187
peptide
 
melanoma
A2
44
VLHWDPETV
50-58
peptide
 
melanoma
A31
5
MSLQRQFLR
alt. ORF
autologous tumor cells
 
DR4
24
ISPNSVFSQWR
VVCDSLEDYD
277-297
peptide
 
DR15
20
SLPYWNFATG
245-254
autologous tumor cells
 
DR17
21
SQWRVVCD
SLEDYDT
284-298
peptide
 
melanoma
A2
44
SVYDFFVWL
180-188
peptide
 
A2
44
TLDSQVMSL
360-368
peptide
 
A31
5
LLGPGRPYR
197-205
autologous tumor cells
 
A33
5
LLGPGRPYR
197-205
autologous tumor cells
 
Cw8
-c
ANDPIFVVL
387-395
autologous tumor cells
 
DR3
21
QCTEVRAD
TRPWSGP
60-74
peptide
 
DR15
20
ALPYWNFATG
241-250
autologous tumor cells
 
melanoma
A1
26
KCDICTDEY
243-251
autologous tumor cells
 
A1
26
SSDYVIPIGTY
146-156
autologous tumor cells
 
A2
44
MLLAVLYCL
1-9
autologous tumor cells
 
A2
44
CLLWSFQTSA
8-17
peptide
 
A2
44
YMDGTMSQV
369-377
autologous tumor cells
 
A24
20
AFLPWHRLF
206-214
autologous tumor cells
 
A24
20
IYMDGTADFSF
368-373 and 336-340e
autologous tumor cells
 
A26
8
QCSGNFMGF
90-98
autologous tumor cells
 
B35
20
TPRLPSSADVEF
309-320
autologous tumor cells
 
B35
20
LPSSADVEF
312-320
autologous tumor cells
 
B38
5
LHHAFVDSIF
388-397
autologous tumor cells
 
B44
21
SEIWRDIDFd
192-200
autologous tumor cells
 
DR4
24
QNILLSNA
PLGPQFP
56-70
autologous tumor cells
 
DR4
24
SYLQDSDPDSFQD
450-462
autologous tumor cells
 
DR15
20
FLLHHAFVDSI
FEQWLQRHRP
386-406
autologous tumor cells
 
aClass II HLA are indicated in blue. bFrequency in Caucasians, based on (1) Marsh SGE, Parham P, Barber LD. The HLA Factsbook (Academic Press, 2000) for HLA-A, B, C, and DR, and (2) Colombani J. HLA, Fonctions immunitaires et applications médicales (John Libbey Eurotext, 1993) for HLA-DP and DR. c Not available. dDifferent alleles encoding tyrosinase have been described. In 50% of Caucasians, the serine residue of nonapeptide SEIWRDIDF is replaced by a tyrosine. eThe peptide is composed of two non-contiguous fragments that are spliced by the proteasome. fPhosphopeptide. gSeems to be poorly processed by tumor cells (Fauquembergue, 2010).


Antigens Overexpressed in Tumors
Gene
Normal tissue expression
HLAa
HLA
Frequ
encyb

(%)
Peptide
Position
Lymphocyte Stimulation Method
References
adipocytes, macrophages
A2
44
SVASTITGV
129-137
peptide
ubiquitous (low level)
A1
26
RSDSGQQARY
intron
autologous tumor cells
mucosa, keratinocytes
A2
44
LLYKLADLI
88-96
peptide
ubiquitous (low level)
A2
44
YLNDHLEPWI
173-182
peptide
ubiquitous (low level)
A2
44
CQWGRLWQL
ORF2
anti-CD3
thyroid
A2
44
VLLQAGSLHA
16-25
autologous tumor cells
proliferating cells, testis, multiple tissues (low level)
A24
20
KFLDALISL
556-564
peptide
ubiquitous (low level)
A2
44
KVHPVIWSL
250-258
autologous tumor cells
A2
44
LMLQNALTTM
1360-1369
autologous tumor cells
ubiquitous (low level)
A2
44
LLGATCMFV
101-109
peptide
DR4
24
NPPSMVAA
GSVVAAV
198-212
peptide
testis, prostate,
mesenchymal stem cells
A2
44
ALGGHPLLGV
20-29
peptide
breast, prostate stroma and epithelium of colon-rectum, pancreas, endometrium
A2
44
TMNGSKSPV
502-510
peptide
epithelial cells
A24
20
RYQLDPKFI
173-181
peptide
many
DR11
25
DVTFNIICKKCG
356-367
autologous tumor cells
ubiquitous (low level)
A2
44
FMVEDETVL
120-128
peptide
A2
44
FINDEIFVEL
165-174
peptide
A24
20
KYDCFLHPF
291-299
peptide
A24
20
KYVGIEREM
735-743
peptide
brain, kidney
A3
22
NTYASPRFKf
172-176
and
204-207
autologous tumor cells
placental and multiple tissues
A2
44
FVGEFFTDV
144-152
peptide
A24
20
EYILSLEEL
298-306
peptide
stomach, liver, pancreas
A2
44
HLSTAFARV
254-262
peptide
ubiquitous (low level)
A2
44
KIFGSLAFL
369-377
autologous tumor cells
A2
44
IISAVVGIL
654-662
peptide
A2
44
ALCRWGLLL
5-13
peptide
A2
44
ILHNGAYSL
435-443
peptide
A2
44
RLLQETELV
689-697
peptide
A2
44
VVLGVVFGI
665-673
peptide
A2
44
YMIMVKCWMI
952-961
peptide
A2
44
HLYQGCQVV
48-56
peptide
A2
44
YLVPQQGFFC
1023-1032
peptide
A2
44
PLQPEQLQV
391-399
peptided
A2
44
TLEEITGYL
402-410
peptided
A2
44
ALIHHNTHL
466-474
peptided
A2
44
PLTSIISAV
650-658
peptided
A3
22
VLRENTSPK
754-762
peptide
A24
20
TYLPTNASL
63-71
peptide
lymph nodes, placenta, and many cell types in the course of inflammatory response
A2
44
ALLEIASCL
199-207
peptide
ubiquitous (low level)
A2
44
NLSSAEVVV
515-523
peptide
A3
44
RLLVPTQFV
199-207
peptide
 
A2
44
WLPF
GFILI
345-353
peptide
liver, intestine, kidney
B7
17
SPRWWPTCL
alt. ORF
autologous tumor cells
liver
A2
44
GVALQTMKQ
542-550
adenovirus-
dendritic
cells
A2
44
FMNKFIYEI
158-166
peptide
DR13
19
QLAVSVILRV
364-373
peptide
prostate and ovarian cancer cancer
A2
44
FLGYLILGV
11-19
peptide
DP4
75
SVSESDT
IRSISIAS
125-139
peptide
DR4
24
LLANGRM
PTVLQCVN
155-169
peptide
DR7
25
RMPTVLQC
VNVSVVS
160-174
peptide
ubiquitous (low level)
A2
44
LLSDDDVVV
12-20
peptide
A2
44
AQPDTAPLPV
284-293
peptide
A2
44
CIAEQYHTV
809-817
peptide
eye lens and low level in multiple tissues
A2
44
FLPEFGISSA
270-279
peptide
liver, kidney
B35
20
LPAVVGL
SPGEQEY
alt. ORF
autologous tumor cells
endothelial cells, chondrocytes, smooth muscle cells
DR11
25
VGQDVSVL
FRVTGALQ
693-708
peptide
ubiquitous (brain, muscle, lung)
A2
44
VLFYLGQY
53-60
tumor lysate
-pulsed APCs
Meloe
ubiquitous (low level)
A2
44
TLNDECWPA
36-44
tumor-infiltrating lymphocytes
DQ6
63
FGRLQGISPKI
32-44
peptide
DR11
25
CPPWHPS
ERISSTL
24-37
peptide
ubiquitous
A2
44
GLPPDVQRVh
560-568
autologous tumor cells
ubiquitous (low level)
A3
22
SLFPNSPKWTSK
96-107
peptide
glandular epithelia
A2
44
STAPPVHNV
950-958
peptide
A2
44
LLLLTVLTV
12-20
peptide
DR3
21
PGSTAPPAHGVT
repeated region
peptide
surface mucosal cells, respiratory tract, and stomach epithelia
A24
20
TCQPTCRSL
716-724
peptide
ubiquitous (low level)
A2
44
LLGRNSFEV
264-272
peptide
A2
44
RMPEAAPPV
65-73
peptide
B46
0.1
SQKTYQGSY
99-107
autologous tumor cells
DP5
3
PGTRVRA
MAIYKQ
153-165
peptide
DR14
6
HLIRVEGNLRVE
193-204
peptide
hemopoietic system
A2
44
TLPGYPPHV
311-319
peptide
ovary, pancreas, spleen, liver
B55
4
CTACRW
KKACQR
499-510
autologous tumor cells
testis, ovary, endometrium, adrenals
A2
44
VLDGLDVLL
100-108
peptide
A2
44
SLYSFPEPEA
142-151
peptide
A2
44
ALYVDSLFFL
300-309
peptide
A2
44
SLLQHLIGL
425-433
peptide
A24
20
LYVDSLFFLc
301-309
autologous tumor cells
prostate, CNS, liver
A24
20
NYARTEDFF
178-186
peptide
retina
A2
44
LKLSGVVRL
352-360
peptide
A2
44
PLPPARNGGLg
32-40
peptide
B7
17
SPSSNRIRNT
11-20
autologous tumor cells
heart, skeletal muscle, pericytes
A2
44
LAALPHSCL
5-13
peptide
A3
22
GLASFKSFLK
74-83
peptide
ubiquitous (low level)
A3
22
RAGLQVRKNK
176-185
peptide
 
A2
44
ALWPW
LLMA(T)
11-19(20)
peptide
 
A24
20
NSQP
VWLCL
721-729
peptide
testis, kidney, bladder
B7
17
LPRWPPPQL
antisense
autologous tumor cells
ubiquitous
A2
44
KMDAEHPEL
196-204
peptide
ubiquitous (low level)
A2
44
AWISKPPGV
332-340
tumor-infiltrating lymphocytes
A2
44
SAWISKPPGV
331-340
tumor-infiltrating lymphocytes
prostate
A2
44
MIAVFLPIV
292-300
peptide
A2
44
HQQYFYKI
PILVINK
102-116
peptide
ubiquitous
A2
44
ELTLGEFLKL
95-104
peptide / protein
ubiquitous
DR1
18
TLGEFLKL
DRERAKN
97-111
peptide / protein
testis, thymus, bone marrow, lymph nodes
A2
44
ILAKFLHWLe
540-548
peptide
A2
44
RLVDDFLLV
865-873
peptide
DR7
25
RPGLLGAS
VLGLDDI
672-686
peptide
DR11
25
LTDLQPY
MRQFVAHL
766-780
peptide
ubiquitous (low level)
B27
7
SRFGGAVVR
-i
peptide
testis, ovary, bone marrow, spleen
A1
26
TSEKRPFMCAY
317-327
peptide
A24
20
CMTWNQMNL
235-243
peptide
DP5
3
LSHLQMHSRKH
337-347
peptide
DR4
24
KRYFKLSH
LQMHSRKH
332-347
peptide
aClass II HLA are indicated in blue. bFrequency in Caucasians, based on (1) Marsh SGE, Parham P, Barber LD. The HLA Factsbook (Academic Press, 2000) for HLA-A, B, C, and DR, and (2) Colombani J. HLA, Fonctions immunitaires et applications médicales (John Libbey Eurotext, 1993) for HLA-DP and DR. cThe antigen is recognized by CTLs bearing an NK inhibitory receptor that prevents lysis of cells expressing certain HLA-C molecules. dA variant peptide with a Y in position 1 was used for T cell stimulation. ePoorly or not processed (Parkhurst, 2004; Ayyoub, 2001). fThe peptide is composed of two non-contiguous fragments that are spliced. gAlternative transcript. hMMP-2 is expressed ubiquitously but melanoma cells cross-present, in an αvβ3-dependent manner, an antigen derived from secreted MMP-2. iThe epitope is located in the untranslated region.
 
 

References
 

Luigi Buonaguro, Annacarmen Petrizzo, Maria Lina Tornesello and Franco M. BuonaguroTranslating Tumor Antigens into Cancer Vaccines. Clin Vaccine Immunol January 2011 vol. 18 no. 1 23-34.

Novellino L, Castelli C, Parmiani G.; A listing of human tumor antigens recognized by T cells: March 2004 update.
Cancer Immunol Immunother. 2005 Mar;54(3):187-207. Epub 2004 Aug 7.

Roopa Srinivasan and Jedd D Wolchok; Tumor antigens for cancer immunotherapy: therapeutic potential of xenogeneic DNA vaccines.Journal of Translational Medicine 2004, 2:12  doi:10.1186/1479-5876-2-12.

Nathalie Vigneron, Vincent Stroobant, Benoît J. Van den Eynde and Pierre van der Bruggen; Database of T cell-defined human tumor antigens: the 2013 update Cancer Immunity(15 July 2013) Vol. 13, p. 15.

van der Bruggen P, Traversari C, Chomez P, Lurquin C, De Plaen E, Van den Eynde B, Knuth A, Boon T.; A gene encoding an antigen recognized by cytolytic T lymphocytes on a human melanoma.
Science. 1991 Dec 13; 254 (5038):1643-7.

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