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DNA Modifications
Halogenated Base Oligo Modification

Halogenated Bases

Brominated and iodinated nucleosides are used in crystallography studies of oligonucleotide structure. They are also photolabile and are used for cross-linking studies to probe the structure of protein-DNA complexes. Antibodies exist to Br-dU and oligonucleotides containing Br-dU can be used as probes. Click on specification page for details.

br-dU Qty. 5'-Mod Internal 3' -mod
200 nmol 15 OD $100 $100 $80
1.0 µmol 35 OD $160 $160 $150
5-Br-dC Qty. 5'-Mod Internal 3' -mod
200 nmol 15 OD $160 $160 NA
1.0 µmol 35 OD $160 $160 NA
8-Br-dA Qty. 5'-Mod Internal 3' -mod
200 nmol 15 OD $280 $280 NA
1.0 µmol 35 OD $280 $280 NA
8-Br-dG Qty. 5'-Mod Internal 3' -mod
200 nmol 15 OD $200 $200 $80
1.0 µmol 35 OD $200 $200 $95
5-I-dC Qty. 5'-Mod Internal 3' -mod
200 nmol 15 OD $340 $340 NA
1.0 µmol 35 OD $340 $340 NA
5-I-dU Qty. 5'-Mod Internal 3' -mod
200 nmol 15 OD $160 $160 NA
1.0 µmol 35 OD $160 $160 NA
5-F-dU Qty. 5'-Mod Internal 3' -mod
200 nmol 15 OD $340 $340 NA
1.0 µmol 35 OD $340 $340 NA

Purification

Desalt or cartridge (RP1) purification is acceptable for most common phosphoramidite modifiers. However, additional purification is strongly recommended for modifiers that require NHS-ester chemistry to conjugate a dye through an amine linker such as Molecular Probes dyes.

Minimum Guarantee Purified Yield

Due to the chemistry of many modifications, yield will be approximately 40 - 60 % less than a standard oligo. Please see our yield chart for details.

Quality Controls

Every oligo synthesized is strictly controlled for quality by using either MALDI-TOF mass spectrometry or polyacrylamide gel electrophoresis (PAGE) analysis. Final yields are determined using UV absorbance at OD260 In addition, we perform QC methods tailored to specific modifications, such as OD ratio measurement where appropriate.

For additional information, please Contact us.

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